BIOBASE Knowledge Library

About BIOBASE Knowledge Library

The Library subscribes to the following components of BIOBASE

  •  ExPlainTM: Gene Expression Analysis System:
    - Analysis of microaray, proteomics, ChIP-seq/ChIP-chip data.
    - Promoter analysis and identification of transcription factors acting together to affect gene expression.
    - Identification of key regulators — potential therapeutic targets.
    - Biomarker analysis.
  • Genome Trax:  enables you to identify human genome variations of functional significance by mapping your NGS data to known elements such as disease mutations and regulatory sites.
  • HGMD: HGMD® Professional is a unique resource providing comprehensive data on human inherited disease mutations to genetics and genomic research. It allows you to: 
    • Prioritize mutations from whole exome or whole genome sequencing
    • Uncover the impact of your human variants on disease risk, gene regulation, and protein function.
    • Remove biologically irrelevant mutations and reduce the amount of mutations you have to investigate
    • Identify novel mutations not previously reported in the literature
    • Understand gene regulation changes in your variants by mapping novel mutations to known or predicted regulatory sites
    • Find disease genes, drug targets, and pathways linked to your variations
  • BKL Proteome: A powerful ontology search query system, with specialized tools for gene set analysis and pathway visualization, allows scientists working with mammalian, yeast, worm and plant species to quickly find answers to questions relevant to their research. A specialized custom sequence annotation tool allows scientists working with other species to extend predictive functions to newly sequenced or otherwise uncharacterized genomes.
  • TRANSFAC:  an internationally unique knowledgebase containing data on eukaryotic transcription factors, their experimentally-proven binding sites, and regulated genes.

Register for BIOBASE

  • You must register to login to BIOBASE
  • To request a login use Ask Librarian or email Jeremy Kupsco,
  • Logins are for use by Emory Employees only.
  • Please log off at the end of each session to prevent blocking other users access.

Login to BIOBASE

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